Microbe-ID is a toolbox that can readily be customized for any taxonomic group or species for sequence based identification of species or marker-based identification of strains.

Microbe-ID aims to:

This site provides all code and applications necessary for creating a website for species identification or strain genotyping.


Microbe-ID is comprised by two main applications: Sequence-ID and Genotype-ID.

Microbe-ID groups these two applications in a HTML5 framework based on Bootstrap that links both applications into a simple, web-ready site to be deployed locally or in a server.

Visit the project page in Github for details in requirements, installation and deployment of Microbe-ID at http://github.com/grunwaldlab/Microbe-ID